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Preview Material for Exam 3 - Fall 2006
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sourceDNA Bases

Use the following chart and formulas when needed.

mRNA-Codon-to-Amino-Acid Decoder Chart

 

 

2nd Letter

 

1st Letter

U

 

C

 

A

 

G

 

3rd Letter

U

UUU
UUC

Phenylalanine

UCU
UCC
UCA
UCG

Serine

UAU
UAC

Tyrosine

UGU
UGC

Cysteine

U

C

UUA
UUG

Leucine

UAA
UAG

STOP

UGA

STOP

A

UGG

Tryptophan

G

C

CUU
CUC
CUA
CUG

Leucine

CCU
CCC
CCA
CCG

Proline

CAU
CAC

Histidine

CGU
CGC
CGA
CGG

Arginine

U

C

CAA
CAG

Glutamine

A

G

A

AUU
AUC
AUA

Isoleucine

ACU
ACC
ACA
ACG

Threonine

AAU
AAC

Asparagine

AGU
AGC

Serine

U

C

AAA
AAG

Lysine

AGA
AGG

Arginine

A

AUG

Methionine; START

G

G

GUU
GUC
GUA
GUG

Valine

GCU
GCC
GCA
GCG

Alanine

GAU
GAC

Aspartate

GGU
GGC
GGA
GGG

Glycine

U

C

GAA
GAG

Glutamate

A

G

sourceH-bonding

 

r=b-d       G=rN       G=rN(K-N)/K      


sourceClostridium botulinum

Dystonia  is a neurological disorder characterized by uncontrollable muscle contractions/spasms.  These contractions are often so intense they force arms, legs or fingers into abnormal positions.  A new treatment for dystonia involves injecting small doses of purified Botulinum toxin (Botox) into affected muscles.  The injections reduce extra muscle contractions but leave enough strength for normal use.  Botulinum toxin is produced by the bacterium Clostridium botulinum.  Some forms of dystonia are inherited as an autosomal dominant trait. 


sourceCodons

Botulinum toxin can harm as well as heal.  The natural form of  the bacterial toxin can paralyze and kill if consumed in a large enough dose in contaminated food.  Once consumed the result is weakness and paralysis that descends from the head down through the body.  The most damaging effect is to the muscles that allow breathing. Botulinum toxin is a protein.  The following sequence comes from the middle of the gene that codes for the toxin: TAG GCA CGT TCG

 


Human red blood cells remain intact when the fluid surrounding them contains the same salt (NaCl) concentration as that found inside the cell, in other words, when they are placed in an isotonic solution. A student, Autumn, knew that for human red blood cells, an isotonic solution would be one that is 0.9% salt.  She wanted to determine the salt concentrations that would result in the swelling and rupturing or the shriveling of the majority of cells in a sample. She obtained red blood cells from a local clinic, made the appropriate salt solutions, added 100 intact cells to each solution and then observed the cells using a microscope.  Her data are presented below. 

sourceErythrocyte

Percent NaCl

1.2

1.1

1.0

0.9

0.8

0.7

0.6

Number of ruptured cells

100

0

1

0

15

63

99

Number of shriveled cells

0

98

71

0

0

1

0


sourceS. aureus imperigo

Staphylococcal infections are caused by the bacterium Staphylococcus aureus that inhabits the skin and mucous membrane of the nose. It is spread by physical contact and droplets from the mouth and nose. MRSA is a term describing bacteria of S. aureus that are resistant to the antibiotic methicillin and other conventional antibiotics. MRSA infections may occur in surgical wounds, burns, catheter sites, eye, skin and blood. Symptoms include redness, swelling and tenderness at the site of infection. In the late 1940s, penicillin was very effective in the treatment of staphylococcal infections but resistance to this antibiotic drug emerged rapidly. Later, the antibiotic drug methicillin was introduced, but resistance to this antibiotic drug also developed very fast. At present, MRSA infections are very common in hospitals in the USA and other countries and the number of infections rises each year.

sourceMethicillin

Methicillin


A small population of sea lions living on a small island off the Oregon Coast has been monitored for 4 years.  A pod of killer whales (Orcas), known to prey upon sea lions, has taken up residence in the water surrounding this island.  The island is 2 acres in size.  The data collected is shown in the below table. 

sourceSea Lion

Year

Population size at the beginning of the year

Number of births

Number of deaths

2000

250

60

22

2001

288

No Data

No Data

2002

328

64

20

2003

372

72

25

2004

419

83

34

sourceBig mouth

sourceBee sting

Bee stings hurt.  Bee stings deliver a venom that causes pain when injected into the skin.  The major component of the venom responsible for pain is a protein called melittin.  The protein is composed of 26 amino acids.  Melittin stimulates the nerve endings of the pain receptors in the skin.  The immune system will recognize melittin and enhance the disposal of the protein. The amino acid sequence glycine-alanine-isoleucine-leucine is part of the amino acid sequence of the melittin protein.